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    atoE short chain fatty acid transporter [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946721, updated on 3-Dec-2024

    Summary

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    Official Symbol
    atoE
    Official Full Name
    short chain fatty acid transporter
    Primary source
    ECOCYC:EG11671
    Locus tag
    b2223
    See related
    ASAP:ABE-0007353
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2216
    Summary
    IT (Ion Transporter) superfamily (Prakash, 2003). [More information is available at EcoGene: EG11671]. AtoE is an inner membrane protein with ten predicted transmembrane domains. [More information is available at EcoCyc: EG11671].
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    Genomic context

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    Sequence:
    NC_000913.3 (2324756..2326078)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene sensor histidine kinase AtoS Neighboring gene DNA-binding transcriptional activator/ornithine decarboxylase inhibitor AtoC Neighboring gene acetyl-CoA:acetoacetyl-CoA transferase subunit alpha Neighboring gene acetyl-CoA:acetoacetyl-CoA transferase subunit beta Neighboring gene acetyl-CoA acetyltransferase Neighboring gene DUF2135 domain-containing protein YfaP

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and molecular characterization of the genes involved in short-chain fatty acid degradation in Escherichia coli: the ato system. Jenkins LS, et al. J Bacteriol, 1987 Jan. PMID 3025185, Free PMC Article
    2. Regulation of the ato operon by the atoC gene in Escherichia coli. Jenkins LS, et al. J Bacteriol, 1987 May. PMID 2883171, Free PMC Article
    3. The role of bacterial antizyme: From an inhibitory protein to AtoC transcriptional regulator. Lioliou EE, et al. Microb Cell Fact, 2004 Jun 16. PMID 15200682, Free PMC Article
    4. Domain structure and pore loops in the 2-hydroxycarboxylate transporter family. Lolkema JS. J Mol Microbiol Biotechnol, 2006. PMID 17114896
    5. Sequence and hydropathy profile analysis of two classes of secondary transporters. Lolkema JS, et al. Mol Membr Biol, 2005 May-Jun. PMID 16096261

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    short chain fatty acid transporter

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2324756..2326078
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416727.1 short chain fatty acid transporter [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416727.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376Y5N9, A0A5B9AI86
      Conserved Domains (1) summary
      pfam02667
      Location:1 → 440
      SCFA_trans; Short chain fatty acid transporter
    Nucleotide Protein
    Heading Accession and Version

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