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    yfdC inner membrane protein YfdC [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 944801, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yfdC
    Official Full Name
    inner membrane protein YfdC
    Primary source
    ECOCYC:G7217
    Locus tag
    b2347
    See related
    ASAP:ABE-0007751
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2341
    Summary
    YfdC is an inner membrane protein with six predicted transmembrane domains. [More information is available at EcoCyc: G7217].
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    Genomic context

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    Sequence:
    NC_000913.3 (2465301..2466233)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YfdF Neighboring gene intermembrane phospholipid transport system - outer membrane lipoprotein MlaA Neighboring gene tRNA-Arg Neighboring gene prophage CPS-53 integrase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Is the E. coli Homolog of the Formate/Nitrite Transporter Family an Anion Channel? A Computational Study. Mukherjee M, et al. Biophys J, 2020 Feb 25. PMID 31968229, Free PMC Article
    2. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
    3. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Is the E. coli Homolog of the Formate/Nitrite Transporter Family an Anion Channel? A Computational Study.
      Title: Is the E. coli Homolog of the Formate/Nitrite Transporter Family an Anion Channel? A Computational Study.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables formate transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in formate transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    inner membrane protein YfdC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2465301..2466233
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416849.1 inner membrane protein YfdC [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416849.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7L7EH34, Q8L1M2
      Conserved Domains (1) summary
      COG2116
      Location:27 → 288
      FocA; Formate/nitrite transporter FocA, FNT family [Inorganic ion transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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