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    ygbA protein YgbA [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947187, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ygbA
    Official Full Name
    protein YgbA
    Primary source
    ECOCYC:EG11287
    Locus tag
    b2732
    See related
    ASAP:ABE-0008973
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2727
    Summary
    NsrR nitrite-sensing regulon. [More information is available at EcoGene: EG11287]. Expression of ygbA is normally upregulated by nitrosative stress . [More information is available at EcoCyc: EG11287].
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    Genomic context

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    Sequence:
    NC_000913.3 (2856453..2856806, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene Fe-(CN)2CO cofactor assembly scaffold protein HypD Neighboring gene carbamoyl dehydratase HypE Neighboring gene DNA-binding transcriptional activator FhlA Neighboring gene DNA mismatch repair protein MutS Neighboring gene phosphoprotein phosphatase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Escherichia coli fdv gene probably encodes mutS and is located at minute 58.8 adjacent to the hyc-hyp gene cluster. Schlensog V, et al. J Bacteriol, 1991 Dec. PMID 1938937, Free PMC Article
    2. Prominent roles of the NorR and Fur regulators in the Escherichia coli transcriptional response to reactive nitrogen species. Mukhopadhyay P, et al. Proc Natl Acad Sci U S A, 2004 Jan 20. PMID 14718666, Free PMC Article
    3. Genome-wide identification of binding sites for the nitric oxide-sensitive transcriptional regulator NsrR. Efromovich S, et al. Methods Enzymol, 2008. PMID 18433631
    4. Dissimilatory metabolism of nitrogen oxides in bacteria: comparative reconstruction of transcriptional networks. Rodionov DA, et al. PLoS Comput Biol, 2005 Oct. PMID 16261196, Free PMC Article
    5. The yjeB (nsrR) gene of Escherichia coli encodes a nitric oxide-sensitive transcriptional regulator. Bodenmiller DM, et al. J Bacteriol, 2006 Feb. PMID 16428390, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein YgbA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2856453..2856806 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417212.1 protein YgbA [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417212.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376UG06
      Conserved Domains (1) summary
      pfam11756
      Location:4 → 108
      YgbA_NO; Nitrous oxide-stimulated promoter
    Nucleotide Protein
    Heading Accession and Version

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