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    rpoN RNA polymerase sigma factor RpoN [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947714, updated on 3-Dec-2024

    Summary

    Official Symbol
    rpoN
    Official Full Name
    RNA polymerase sigma factor RpoN
    Primary source
    ECOCYC:EG10898
    Locus tag
    b3202
    See related
    ASAP:ABE-0010514
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3191; glnF; ntrA
    Summary
    RpoN, aslo called sigma N, was originally identified as the sigma factor for nitrogen-controlled genes. [More information is available at EcoGene: EG10898]. Sigma 54 controls expression of nitrogen-related genes, directing |FRAME: [More information is available at EcoCyc: EG10898].
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    Genomic context

    Sequence:
    NC_000913.3 (3344717..3346150)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene lipopolysaccharide transport system protein LptC Neighboring gene lipopolysaccharide transport system protein LptA Neighboring gene lipopolysaccharide transport system ATP binding protein LptB Neighboring gene ribosome hibernation-promoting factor Neighboring gene phosphotransferase system enzyme IIA(Ntr)

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA-binding transcription activator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables DNA-binding transcription activator activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA-binding transcription activator activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables DNA-binding transcription activator activity IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables nucleotidyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables sigma factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables transcription cis-regulatory region binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables transcription cis-regulatory region binding IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription initiation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in DNA-templated transcription initiation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in arginine metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cell motility NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in nitrate assimilation NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of DNA-templated transcription initiation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in submerged biofilm formation NAS
    Non-traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of DNA-directed RNA polymerase complex IEA
    Inferred from Electronic Annotation
    more info
     
    part_of cytosolic DNA-directed RNA polymerase complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    part_of protein-DNA complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of protein-DNA complex IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    part_of protein-DNA complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 

    General protein information

    Preferred Names
    RNA polymerase sigma factor RpoN

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3344717..3346150
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417669.1 RNA polymerase sigma factor RpoN [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417669.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A3P5DUQ2, A0A8T6Q6H5, A0AAN3IM48
      Conserved Domains (1) summary
      PRK05932
      Location:1476
      PRK05932; RNA polymerase factor sigma-54; Reviewed