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    yjdC putative DNA-binding transcriptional regulator YjdC [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948650, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yjdC
    Official Full Name
    putative DNA-binding transcriptional regulator YjdC
    Primary source
    ECOCYC:EG12176
    Locus tag
    b4135
    See related
    ASAP:ABE-0013537
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    cutA3; ECK4129
    Summary
    TetR family. [More information is available at EcoGene: EG12176].
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    Genomic context

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    Sequence:
    NC_000913.3 (4362733..4363308, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene tRNA-Phe Neighboring gene thiol-disulfide exchange protein DsbD Neighboring gene copper binding protein CutA Neighboring gene C4-dicarboxylate transporter DcuA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pathoadaptive mutations that enhance virulence: genetic organization of the cadA regions of Shigella spp. Day WA Jr, et al. Infect Immun, 2001 Dec. PMID 11705922, Free PMC Article
    2. Identification of elements involved in transcriptional regulation of the Escherichia coli cad operon by external pH. Watson N, et al. J Bacteriol, 1992 Jan. PMID 1370290, Free PMC Article
    3. Multiple stressor-induced proteome responses of Escherichia coli BL21(DE3). Han KY, et al. J Proteome Res, 2008 May. PMID 18363324
    4. Molecular genetics of a chromosomal locus involved in copper tolerance in Escherichia coli K-12. Fong ST, et al. Mol Microbiol, 1995 Mar. PMID 7623666
    5. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative DNA-binding transcriptional regulator YjdC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4362733..4363308 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418558.2 putative DNA-binding transcriptional regulator YjdC [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418558.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376FVH8, A0A377CDH0, A0A8S0G4F4
      Conserved Domains (1) summary
      PRK11640
      Location:1 → 191
      PRK11640; putative transcriptional regulator; Provisional
    Nucleotide Protein
    Heading Accession and Version

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