U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    lapA lipopolysaccharide assembly protein A [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 944936, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    lapA
    Official Full Name
    lipopolysaccharide assembly protein A
    Primary source
    ECOCYC:G6637
    Locus tag
    b1279
    See related
    ASAP:ABE-0004298
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1274; yciS
    Summary
    YciS is predicted to have two TM segments; the first segment may be erroneously predicted to be a type II signal peptide prediction. [More information is available at EcoGene: EG13904]. YciS is an inner membrane protein with two predicted transmembrane domains. [More information is available at EcoCyc: G6637].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (1340243..1340551)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene GTP cyclohydrolase 2 Neighboring gene phosphatidylglycerophosphatase B Neighboring gene lipopolysaccharide assembly protein B Neighboring gene orotidine-5'-phosphate decarboxylase Neighboring gene putative translation factor

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Inner Membrane Protein YhcB Interacts with RodZ Involved in Cell Shape Maintenance in Escherichia coli. Li G, et al. ISRN Mol Biol, 2012. PMID 27335665, Free PMC Article
    2. The global transcriptional response of Escherichia coli to induced sigma 32 protein involves sigma 32 regulon activation followed by inactivation and degradation of sigma 32 in vivo. Zhao K, et al. J Biol Chem, 2005 May 6. PMID 15757896
    3. Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress. Nonaka G, et al. Genes Dev, 2006 Jul 1. PMID 16818608, Free PMC Article
    4. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
    5. Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. Zhang N, et al. Proteomics, 2007 Feb. PMID 17309111

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipopolysaccharide metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    lipopolysaccharide assembly protein A

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1340243..1340551
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415795.1 lipopolysaccharide assembly protein A [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415795.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A895NZT8
      Conserved Domains (1) summary
      COG3771
      Location:1 → 101
      YciS; Uncharacterized membrane protein YciS, DUF1049 family [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.