U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    opgD glucans biosynthesis protein D [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945994, updated on 17-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    opgD
    Official Full Name
    glucans biosynthesis protein D
    Primary source
    ECOCYC:EG12859
    Locus tag
    b1424
    See related
    ASAP:ABE-0004754
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1418; mdoD; ydcG; yzzZ
    Summary
    The opg genes were originally called mdo because the osmoregulated periplasmic glucans (OPGs) were originally called membrane-derived oligosaccharides. [More information is available at EcoGene: EG12859]. The mdoD gene (encoding the OpgD protein) was identified in silico as a paralog of mdoG . [More information is available at EcoCyc: EG12859].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (1496856..1498511)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional dual regulator YdcI Neighboring gene DUF1338 domain-containing protein YdcJ Neighboring gene DUF465 domain-containing protein YdcH Neighboring gene ribosomal-protein-L12-serine N-acetyltransferase Neighboring gene putative acyltransferase YdcK

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Cloning and molecular characterization of the gene rimL which encodes an enzyme acetylating ribosomal protein L12 of Escherichia coli K12. Tanaka S, et al. Mol Gen Genet, 1989 Jun. PMID 2671655
    2. Identification of mdoD, an mdoG paralog which encodes a twin-arginine-dependent periplasmic protein that controls osmoregulated periplasmic glucan backbone structures. Lequette Y, et al. J Bacteriol, 2004 Jun. PMID 15175282, Free PMC Article
    3. Pathfinders and trailblazers: a prokaryotic targeting system for transport of folded proteins. Sargent F, et al. FEMS Microbiol Lett, 2006 Jan. PMID 16445746
    4. Protein targeting by the bacterial twin-arginine translocation (Tat) pathway. Berks BC, et al. Curr Opin Microbiol, 2005 Apr. PMID 15802249
    5. The Tat protein translocation pathway and its role in microbial physiology. Berks BC, et al. Adv Microb Physiol, 2003. PMID 14560665

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. N-terminus verified by Edman degradation on mature peptide
      Title: Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    glucans biosynthesis protein D

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1496856..1498511
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415941.5 glucans biosynthesis protein D [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415941.5

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6N8NGR8
      Conserved Domains (1) summary
      COG3131
      Location:1 → 542
      MdoG; Periplasmic glucans biosynthesis protein [Cell wall/membrane/envelope biogenesis]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.