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    ydgH DUF1471 domain-containing protein YdgH [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945117, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ydgH
    Official Full Name
    DUF1471 domain-containing protein YdgH
    Primary source
    ECOCYC:G6860
    Locus tag
    b1604
    See related
    ASAP:ABE-0005359
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1599
    Summary
    The first 22 aa are predicted to be a type I signal peptide. [More information is available at EcoGene: EG13929].
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    Genomic context

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    Sequence:
    NC_000913.3 (1678427..1679371)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene pyridine nucleotide transhydrogenase subunit beta Neighboring gene pyridine nucleotide transhydrogenase subunit alpha Neighboring gene putative arginine:ornithine antiporter Neighboring gene dihydromonapterin reductase Neighboring gene GlpM family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Low molecular weight proteins: a challenge for post-genomic research. Rudd KE, et al. Electrophoresis, 1998 Apr. PMID 9588799
    2. Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography. Fountoulakis M, et al. Electrophoresis, 1999 Aug. PMID 10493123
    3. Proteome analysis of Escherichia coli using high-performance liquid chromatography and Fourier transform ion cyclotron resonance mass spectrometry. Ihling C, et al. Proteomics, 2005 May. PMID 15852340
    4. Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. Lu P, et al. Nat Biotechnol, 2007 Jan. PMID 17187058
    5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    DUF1471 domain-containing protein YdgH

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1678427..1679371
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416121.1 DUF1471 domain-containing protein YdgH [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416121.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2W6NY25, A0A376JZQ6, A0A6N8QRY5
      Conserved Domains (1) summary
      pfam07338
      Location:119 → 173
      DUF1471; Protein of unknown function (DUF1471)
    Nucleotide Protein
    Heading Accession and Version

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