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    rhmD L-rhamnonate dehydratase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945881, updated on 3-Dec-2024

    Summary

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    Official Symbol
    rhmD
    Official Full Name
    L-rhamnonate dehydratase
    Primary source
    ECOCYC:G7160
    Locus tag
    b2247
    See related
    ASAP:ABE-0007436
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2240; yfaW
    Summary
    L-rhamnonate dehydratase also dehydrates L-lyxonate, L-mannonate and D-gulonate (Rakus, 2008). [More information is available at EcoGene: EG14085]. YfaW is a L-rhamnonate dehydratase (RhamD) with promiscuous substrate specificity . [More information is available at EcoCyc: G7160].
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    Genomic context

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    Sequence:
    NC_000913.3 (2360209..2361414, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene 2-keto-3-deoxy-L-rhamnonate aldolase Neighboring gene putative transporter YfaV Neighboring gene putative DNA-binding transcriptional regulator YfaX Neighboring gene IPR008135 CinA family protein YfaY

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Crystal structure and functional assignment of YfaU, a metal ion dependent class II aldolase from Escherichia coli K12. Rea D, et al. Biochemistry, 2008 Sep 23. PMID 18754683
    2. Evolution of enzymatic activities in the enolase superfamily: L-rhamnonate dehydratase. Rakus JF, et al. Biochemistry, 2008 Sep 23. PMID 18754693, Free PMC Article
    3. DNA microarray-based identification of genes controlled by autoinducer 2-stimulated quorum sensing in Escherichia coli. DeLisa MP, et al. J Bacteriol, 2001 Sep. PMID 11514505, Free PMC Article
    4. Divergent evolution in the enolase superfamily: the interplay of mechanism and specificity. Gerlt JA, et al. Arch Biochem Biophys, 2005 Jan 1. PMID 15581566
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables L-rhamnonate dehydratase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables L-rhamnonate dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydro-lyase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables hydro-lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables identical protein binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables magnesium ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in amino acid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in carbohydrate catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    L-rhamnonate dehydratase
    NP_416750.2

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2360209..2361414 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416750.2 L-rhamnonate dehydratase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416750.2

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      B1IXU0, B1X8W0, C4ZU89
      UniProtKB/TrEMBL
      A0A1X3JEC6
      Conserved Domains (1) summary
      PRK15440
      Location:1 → 401
      PRK15440; L-rhamnonate dehydratase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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