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    yaaA DNA binding and peroxide stress response protein YaaA [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 944749, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yaaA
    Official Full Name
    DNA binding and peroxide stress response protein YaaA
    Primary source
    ECOCYC:EG10011
    Locus tag
    b0006
    See related
    ASAP:ABE-0000018
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0006
    Summary
    yaaA shows OxyR-dependent induction of expression by hydrogen peroxide . [More information is available at EcoCyc: EG10011].
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    Genomic context

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    Sequence:
    NC_000913.3 (5683..6459, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene threonine synthase Neighboring gene DUF2502 domain-containing protein YaaX Neighboring gene putative transporter YaaJ Neighboring gene transaldolase B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The DUF328 family member YaaA is a DNA-binding protein with a novel fold. Prahlad J, et al. J Biol Chem, 2020 Oct 9. PMID 32796037, Free PMC Article
    2. Nucleotide sequence of thrC and of the transcription termination region of the threonine operon in Escherichia coli K12. Parsot C, et al. Nucleic Acids Res, 1983 Nov 11. PMID 6316258, Free PMC Article
    3. DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide. Zheng M, et al. J Bacteriol, 2001 Aug. PMID 11443091, Free PMC Article
    4. Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography. Fountoulakis M, et al. Electrophoresis, 1999 Aug. PMID 10493123
    5. Systematic sequencing of the Escherichia coli genome: analysis of the 0-2.4 min region. Yura T, et al. Nucleic Acids Res, 1992 Jul 11. PMID 1630901, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The DUF328 family member YaaA is a DNA-binding protein with a novel fold.
      Title: The DUF328 family member YaaA is a DNA-binding protein with a novel fold.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA secondary structure binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in response to hydroperoxide IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within response to hydroperoxide IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to hydroperoxide IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA binding and peroxide stress response protein YaaA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      5683..6459 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414547.1 DNA binding and peroxide stress response protein YaaA [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414547.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7K446
      Conserved Domains (1) summary
      PRK02101
      Location:1 → 257
      PRK02101; peroxide stress protein YaaA
    Nucleotide Protein
    Heading Accession and Version

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