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    ynbD phosphatase domain-containing protein YnbD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945985, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ynbD
    Official Full Name
    phosphatase domain-containing protein YnbD
    Primary source
    ECOCYC:G6730
    Locus tag
    b1411
    See related
    ASAP:ABE-0004710
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1404
    Summary
    [More information is available at EcoGene: EG13751].
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    Genomic context

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    Sequence:
    NC_000913.3 (1480909..1482201)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene CDP-alcohol phosphatidyltransferase domain-containing protein YnbA Neighboring gene putative CDP-diglyceride synthase Neighboring gene hydrolase/methyltransferase domain-containing protein YnbC Neighboring gene FMN dependent NADH:quinone oxidoreductase Neighboring gene ATP-dependent 3'->5' RNA helicase HrpA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043
    2. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
    3. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables phosphoprotein phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    phosphatase domain-containing protein YnbD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1480909..1482201
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415929.1 phosphatase domain-containing protein YnbD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415929.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0F3SIA4, A0A1X1LVX7
      Conserved Domains (2) summary
      cd03386
      Location:47 → 197
      PAP2_Aur1_like; PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of inositol phosphate to ceramide, an essential step in yeast sphingolipid synthesis, and is the target of several antifungal compounds such as aureobasidin.
      cd14527
      Location:295 → 429
      DSP_bac; unknown subfamily of bacterial and plant dual specificity protein phosphatases
    Nucleotide Protein
    Heading Accession and Version

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