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    ydcI DNA-binding transcriptional dual regulator YdcI [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948865, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydcI
    Official Full Name
    DNA-binding transcriptional dual regulator YdcI
    Primary source
    ECOCYC:G6737
    Locus tag
    b1422
    See related
    ASAP:ABE-0004746
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1416
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    Genomic context

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    Sequence:
    NC_000913.3 (1494148..1495071, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative regulatory protein MokB Neighboring gene ncRNA Neighboring gene methyl-accepting chemotaxis protein Trg Neighboring gene DUF1338 domain-containing protein YdcJ Neighboring gene glucans biosynthesis protein D

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Bacterial genus-specific tolerance for YdcI expression. Solomon L, et al. Curr Microbiol, 2014 Nov. PMID 24962596
    2. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
    3. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    DNA-binding transcriptional dual regulator YdcI

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1494148..1495071 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415939.2 DNA-binding transcriptional dual regulator YdcI [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415939.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2W6P759, A0A376W4Z7, A0A793CA97, A0A7A6W2R1
      Conserved Domains (1) summary
      TIGR02424
      Location:9 → 302
      TF_pcaQ; pca operon transcription factor PcaQ
    Nucleotide Protein
    Heading Accession and Version

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