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    ydcU putative ABC transporter membrane subunit YdcU [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945976, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydcU
    Official Full Name
    putative ABC transporter membrane subunit YdcU
    Primary source
    ECOCYC:G6753
    Locus tag
    b1442
    See related
    ASAP:ABE-0004807
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1436
    Summary
    Putative YdcVUTS ABC transport system. ydcU, potB and potH are paralogs. [More information is available at EcoGene: EG13764]. YdcU is a membrane component of a predicted spermidine/putrescine ABC transporter. [More information is available at EcoCyc: G6753].
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    Genomic context

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    Sequence:
    NC_000913.3 (1513831..1514772)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative ABC transporter periplasmic binding protein/polyhydroxybutyrate synthase Neighboring gene putative ABC transporter ATP-binding protein YdcT Neighboring gene putative ABC transporter membrane subunit YdcV Neighboring gene gamma-aminobutyraldehyde dehydrogenase Neighboring gene uncharacterized protein YncL

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ATP-binding cassette transporters in Escherichia coli. Moussatova A, et al. Biochim Biophys Acta, 2008 Sep. PMID 18634750
    2. Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation. Zimmer DP, et al. Proc Natl Acad Sci U S A, 2000 Dec 19. PMID 11121068, Free PMC Article
    3. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
    4. Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. Saurin W, et al. J Mol Evol, 1999 Jan. PMID 9873074
    5. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in transmembrane transport NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative ABC transporter membrane subunit YdcU

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1513831..1514772
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415959.1 putative ABC transporter membrane subunit YdcU [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415959.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6M9WW44
      Conserved Domains (1) summary
      COG1176
      Location:39 → 313
      PotB; ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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