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    dgcF putative diguanylate cyclase DgcF [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947422, updated on 17-Dec-2024

    Summary

    Official Symbol
    dgcF
    Official Full Name
    putative diguanylate cyclase DgcF
    Primary source
    ECOCYC:G6808
    Locus tag
    b1522
    See related
    ASAP:ABE-0005081
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1515; yneF
    Summary
    YneF has a C-terminal putative diguanylate cyclase GGDEF domain. [More information is available at EcoGene: EG13814].
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    Genomic context

    Sequence:
    NC_000913.3 (1610907..1611854, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene PF01062 family inner membrane protein YneE Neighboring gene tagaturonate reductase Neighboring gene DUF4186 domain-containing protein YneG Neighboring gene glutaminase 2 Neighboring gene succinate semialdehyde dehydrogenase (NAD(P)(+)) Sad

    General gene information

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables diguanylate cyclase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables diguanylate cyclase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    putative diguanylate cyclase DgcF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1610907..1611854 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416039.1 putative diguanylate cyclase DgcF [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416039.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0H3EVD9, A0A6D0XKZ0, A0AAV3H9V0, A0AAV3I6Q0, C3T9U2
      Conserved Domains (1) summary
      pfam00990
      Location:146304
      GGDEF; Diguanylate cyclase, GGDEF domain