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    amyA alpha-amylase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946434, updated on 3-Dec-2024

    Summary

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    Official Symbol
    amyA
    Official Full Name
    alpha-amylase
    Primary source
    ECOCYC:EG11387
    Locus tag
    b1927
    See related
    ASAP:ABE-0006414
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1926; yedC
    Summary
    AmyA is a cytoplasmic -amylase. [More information is available at EcoCyc: EG11387].
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    Genomic context

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    Sequence:
    NC_000913.3 (2006156..2007643)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene flagellar biosynthesis protein FliS Neighboring gene flagellar biosynthesis protein FliT Neighboring gene lipoprotein YedD Neighboring gene putative selenium transporter YedE Neighboring gene putative sulfurtransferase YedF

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Escherichia coli produces a cytoplasmic alpha-amylase, AmyA. Raha M, et al. J Bacteriol, 1992 Oct. PMID 1400215, Free PMC Article
    2. Organization of the Escherichia coli and Salmonella typhimurium chromosomes between flagellar regions IIIa and IIIb, including a large non-coding region. Raha M, et al. J Gen Microbiol, 1993 Jul. PMID 8371104
    3. A beta-galactosidase-based bacterial two-hybrid system to assess protein-protein interactions in the correct cellular environment. Borloo J, et al. J Proteome Res, 2007 Jul. PMID 17539672
    4. Subdivision of flagellar region III of the Escherichia coli and Salmonella typhimurium chromosomes and identification of two additional flagellar genes. Kawagishi I, et al. J Gen Microbiol, 1992 Jun. PMID 1527488
    5. A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map. Itoh T, et al. DNA Res, 1996 Dec 31. PMID 9097040

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables alpha-amylase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables alpha-amylase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables alpha-amylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity, acting on glycosyl bonds IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    alpha-amylase
    NP_416437.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2006156..2007643
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416437.1 alpha-amylase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416437.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A776LA02, A0A826IT68
      Conserved Domains (1) summary
      PRK09441
      Location:1 → 490
      PRK09441; cytoplasmic alpha-amylase; Reviewed
    Nucleotide Protein
    Heading Accession and Version

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