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    ygdQ PF03741 family inner membrane protein YgdQ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947295, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ygdQ
    Official Full Name
    PF03741 family inner membrane protein YgdQ
    Primary source
    ECOCYC:G7460
    Locus tag
    b2832
    See related
    ASAP:ABE-0009290
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2828
    Summary
    Membrane topology predictions using experimentally determined C terminus locations indicate that YgdQ has 7 transmembrane helices and the C-terminus is located in the cytoplasm . [More information is available at EcoCyc: G7460].
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    Genomic context

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    Sequence:
    NC_000913.3 (2970420..2971133)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene YgdT Neighboring gene DNA mismatch repair protein MutH Neighboring gene DUF903 domain-containing lipoprotein YgdR Neighboring gene putative NADP(H)-dependent aldo-keto reductase Tas

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A PhoQ/P-regulated small RNA regulates sensitivity of Escherichia coli to antimicrobial peptides. Moon K, et al. Mol Microbiol, 2009 Dec. PMID 19889087, Free PMC Article
    2. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
    3. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
    4. Experimentally based topology models for E. coli inner membrane proteins. Rapp M, et al. Protein Sci, 2004 Apr. PMID 15044727, Free PMC Article
    5. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    PF03741 family inner membrane protein YgdQ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2970420..2971133
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417309.1 PF03741 family inner membrane protein YgdQ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417309.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6D0IDM0
      Conserved Domains (1) summary
      COG0861
      Location:1 → 236
      TerC; Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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