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    rplM 50S ribosomal subunit protein L13 [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947828, updated on 3-Dec-2024

    Summary

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    Official Symbol
    rplM
    Official Full Name
    50S ribosomal subunit protein L13
    Primary source
    ECOCYC:EG10874
    Locus tag
    b3231
    See related
    ASAP:ABE-0010599
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3220
    Summary
    The L13 protein is an early assembly component of the 50S subunit of the ribosome. [More information is available at EcoCyc: EG10874].
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    Genomic context

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    Sequence:
    NC_000913.3 (3378223..3378651, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene stringent starvation protein A Neighboring gene 30S ribosomal subunit protein S9 Neighboring gene cell division protein ZapE Neighboring gene Z-ring associated protein G

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The synthesis of a photoreactive puromycin analogue and its application for labeling proteins in the 50-S subunit of Escherichia coli ribosomes. Krassnigg F, et al. Eur J Biochem, 1978 Jul 3. PMID 354931
    2. Pervasive Regulatory Functions of mRNA Structure Revealed by High-Resolution SHAPE Probing. Mustoe AM, et al. Cell, 2018 Mar 22. PMID 29551268, Free PMC Article
    3. The gene for ribosomal protein L13, rplM, is located near argR, at about 70 minutes on the Escherichia coli chromosomal linkage map. Dabbs ER. J Bacteriol, 1982 Feb. PMID 7035437, Free PMC Article
    4. Photo-induced labelling of Escherichia coli ribosomes by a tobramycin analog. Tangy F, et al. Eur J Biochem, 1983 Apr 5. PMID 6341055
    5. Photoaffinity labeling of the pactamycin binding site on eubacterial ribosomes. Tejedor F, et al. Biochemistry, 1985 Jul 2. PMID 3899171

    See all (50) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. N-terminus verified by Edman degradation on complete protein
      Title: A method for the chemical generation of N-terminal peptide sequence tags for rapid protein identification.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables large ribosomal subunit rRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables mRNA 5'-UTR binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translation NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in negative regulation of translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within negative regulation of translation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of cytosolic large ribosomal subunit IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of cytosolic large ribosomal subunit IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    50S ribosomal subunit protein L13

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3378223..3378651 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417698.1 50S ribosomal subunit protein L13 [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417698.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5C9ANX6
      Conserved Domains (1) summary
      PRK09216
      Location:1 → 142
      rplM; 50S ribosomal protein L13; Reviewed
    Nucleotide Protein
    Heading Accession and Version

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