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    plaR DNA-binding transcriptional repressor PlaR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948084, updated on 3-Dec-2024

    Summary

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    Official Symbol
    plaR
    Official Full Name
    DNA-binding transcriptional repressor PlaR
    Primary source
    ECOCYC:EG12278
    Locus tag
    b3574
    See related
    ASAP:ABE-0011677
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3563; yiaJ
    Summary
    YiaJ is a transcriptional repressor that negatively controls the expression of genes involved in the catabolism of the rare pentose l-lyxose . [More information is available at EcoCyc: EG12278].
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    Genomic context

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    Sequence:
    NC_000913.3 (3741684..3742532, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene valine--pyruvate aminotransferase Neighboring gene putative electron transport protein YsaA Neighboring gene 2,3-diketo-L-gulonate reductase Neighboring gene DUF386 domain-containing protein YiaL

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Deletion of the yiaMNO transporter genes affects the growth characteristics of Escherichia coli K-12. Plantinga TH, et al. Microbiology (Reading), 2005 May. PMID 15870475
    2. A rare 920-kilobase chromosomal inversion mediated by IS1 transposition causes constitutive expression of the yiaK-S operon for carbohydrate utilization in Escherichia coli. Badía J, et al. J Biol Chem, 1998 Apr 3. PMID 9525947
    3. Regulation of expression of the yiaKLMNOPQRS operon for carbohydrate utilization in Escherichia coli: involvement of the main transcriptional factors. Ibañez E, et al. J Bacteriol, 2000 Aug. PMID 10913096, Free PMC Article
    4. Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes. Sofia HJ, et al. Nucleic Acids Res, 1994 Jul 11. PMID 8041620, Free PMC Article
    5. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    DNA-binding transcriptional repressor PlaR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3741684..3742532 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418031.1 DNA-binding transcriptional repressor PlaR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418031.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7H9S0U9
      Conserved Domains (1) summary
      COG1414
      Location:24 → 271
      IclR; DNA-binding transcriptional regulator, IclR family [Transcription]
    Nucleotide Protein
    Heading Accession and Version

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