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    rhlE ATP-dependent RNA helicase RhlE [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945425, updated on 3-Dec-2024

    Summary

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    Official Symbol
    rhlE
    Official Full Name
    ATP-dependent RNA helicase RhlE
    Primary source
    ECOCYC:EG11235
    Locus tag
    b0797
    See related
    ASAP:ABE-0002719
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0786
    Summary
    rhlE is transiently after a cold shock, dependent on the presence of PNPase. [More information is available at EcoGene: EG11235]. RhlE is a ribosome-associated factor that may be involved in ribosome maturation . [More information is available at EcoCyc: EG11235].
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    Genomic context

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    Sequence:
    NC_000913.3 (830872..832236)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene ABC exporter ATP binding subunit YbhF Neighboring gene HlyD_D23 family protein YbhG Neighboring gene DNA-binding transcriptional dual regulator CecR Neighboring gene N-glycosidase YbiA Neighboring gene ATP-dependent DNA helicase DinG

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isotropic-nematic transition in hard-rod fluids: relation between continuous and restricted-orientation models. Shundyak K, et al. Phys Rev E Stat Nonlin Soft Matter Phys, 2004 Apr. PMID 15169029
    2. The E. coli RhlE RNA helicase regulates the function of related RNA helicases during ribosome assembly. Jain C. RNA, 2008 Feb. PMID 18083833, Free PMC Article
    3. Allosteric activation of the ATPase activity of the Escherichia coli RhlB RNA helicase. Worrall JA, et al. J Biol Chem, 2008 Feb 29. PMID 18165229, Free PMC Article
    4. Complementation analysis of the cold-sensitive phenotype of the Escherichia coli csdA deletion strain. Awano N, et al. J Bacteriol, 2007 Aug. PMID 17557820, Free PMC Article
    5. DEAD-box RNA helicases in Escherichia coli. Iost I, et al. Nucleic Acids Res, 2006. PMID 16935881, Free PMC Article

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP-dependent H2AZ histone chaperone activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP-dependent H3-H4 histone complex chaperone activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA clamp loader activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA helicase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA helicase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables chromatin extrusion motor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables cohesin loader activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin looping IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to heat IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in ribosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within ribosome assembly IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent RNA helicase RhlE

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      830872..832236
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415318.1 ATP-dependent RNA helicase RhlE [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415318.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7A6VW15
      Conserved Domains (1) summary
      PRK10590
      Location:1 → 454
      PRK10590; ATP-dependent RNA helicase RhlE; Provisional
    Nucleotide Protein
    Heading Accession and Version

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