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    ycdU uncharacterized protein YcdU [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945592, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ycdU
    Official Full Name
    uncharacterized protein YcdU
    Primary source
    ECOCYC:G6536
    Locus tag
    b1029
    See related
    ASAP:ABE-0003489
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1017
    Summary
    The adjacent downstream region contains four copies of the rsX tRNA-linked repeats that were origianlly annotated as protein-coding (YcdV, b1031) in U00096.1. ycdV has been dropped as an unlikely CDS prediction. [More information is available at EcoGene: EG13867]. Membrane topology predictions using experimentally determined C terminus locations indicate that YcdU has 8 transmembrane helices and the C-terminus is located in the cytoplasm . [More information is available at EcoCyc: G6536].
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    Genomic context

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    Sequence:
    NC_000913.3 (1095843..1096829)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative diguanylate cyclase DgcT Neighboring gene IS3 element protein InsF Neighboring gene IS3 element protein InsE Neighboring gene pseudo Neighboring gene tRNA-Ser Neighboring gene glyoxylate/hydroxypyruvate reductase A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Experimentally based topology models for E. coli inner membrane proteins. Rapp M, et al. Protein Sci, 2004 Apr. PMID 15044727, Free PMC Article
    2. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
    3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein YcdU

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1095843..1096829
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415548.1 uncharacterized protein YcdU [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415548.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376RKG3
    Nucleotide Protein
    Heading Accession and Version

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