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    ydcO putative transport protein YdcO [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947247, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydcO
    Official Full Name
    putative transport protein YdcO
    Primary source
    ECOCYC:G6744
    Locus tag
    b1433
    See related
    ASAP:ABE-0004780
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1427
    Summary
    YdcO is an uncharacterised member of the major facilitator superfamily (MFS) of transporters . [More information is available at EcoCyc: G6744].
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    Genomic context

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    Sequence:
    NC_000913.3 (1504905..1506080, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene putative RNA-guided DNA endonuclease InsQ Neighboring gene DNA-binding transcriptional dual regulator SutR Neighboring gene 23S rRNA 5-hydroxycytidine C2501 synthase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Major facilitator superfamily. Pao SS, et al. Microbiol Mol Biol Rev, 1998 Mar. PMID 9529885, Free PMC Article
    2. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
    3. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
    4. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables benzoate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in benzoate transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative transport protein YdcO

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1504905..1506080 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415950.4 putative transport protein YdcO [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415950.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376K394, A0A979H334
      Conserved Domains (1) summary
      cl23746
      Location:1 → 382
      Xan_ur_permease; Permease family
    Nucleotide Protein
    Heading Accession and Version

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