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    yejA putative oligopeptide ABC transporter periplasmic binding protein YejA [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946675, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yejA
    Official Full Name
    putative oligopeptide ABC transporter periplasmic binding protein YejA
    Primary source
    ECOCYC:EG12037
    Locus tag
    b2177
    See related
    ASAP:ABE-0007206
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2171
    Summary
    YejABEF microcin C ABC transport system. [More information is available at EcoGene: EG12037]. YejA is a periplasmic binding component of the YejA/YejB/YejE/YejF ABC transporter. [More information is available at EcoCyc: EG12037].
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    Genomic context

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    Sequence:
    NC_000913.3 (2272364..2274178)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene peptidoglycan endopeptidase/peptidoglycan L,D-carboxypeptidase Neighboring gene putative c-di-GMP phosphodiesterase PdeN Neighboring gene putative oligopeptide ABC transporter membrane subunit YejB Neighboring gene putative oligopeptide ABC transporter membrane subunit YejE

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of peptide chain length and constituency requirements for YejABEF-mediated uptake of microcin C analogues. Vondenhoff GH, et al. J Bacteriol, 2011 Jul. PMID 21602342, Free PMC Article
    2. The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C. Novikova M, et al. J Bacteriol, 2007 Nov. PMID 17873039, Free PMC Article
    3. Gene fusions and gene duplications: relevance to genomic annotation and functional analysis. Serres MH, et al. BMC Genomics, 2005 Mar 9. PMID 15757509, Free PMC Article
    4. Identification of Escherichia coli genes that are specifically expressed in a murine model of septicemic infection. Khan MA, et al. Infect Immun, 2002 Jul. PMID 12065479, Free PMC Article
    5. A small bacterial RNA regulates a putative ABC transporter. Antal M, et al. J Biol Chem, 2005 Mar 4. PMID 15618228

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. An minimal peptide chain length of 6 amino acids and an N-terminal formyl-methionyl-arginyl sequence of microcin C are required for YejABEF-mediated uptake.
      Title: Characterization of peptide chain length and constituency requirements for YejABEF-mediated uptake of microcin C analogues.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables ABC-type oligopeptide transporter activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables peptide transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in microcin transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in microcin transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within microcin transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in oligopeptide transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within oligopeptide transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in peptide transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in peptide transport NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of ATP-binding cassette (ABC) transporter complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in membrane NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    is_active_in outer membrane-bounded periplasmic space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in outer membrane-bounded periplasmic space IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in outer membrane-bounded periplasmic space IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative oligopeptide ABC transporter periplasmic binding protein YejA
    NP_416682.4

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2272364..2274178
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416682.4 putative oligopeptide ABC transporter periplasmic binding protein YejA [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416682.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7F810
      Conserved Domains (1) summary
      cd08497
      Location:39 → 573
      PBP2_NikA_DppA_OppA_like_14; The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold
    Nucleotide Protein
    Heading Accession and Version

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