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    csqR DNA-binding transcriptional dual regulator CsqR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948381, updated on 3-Dec-2024

    Summary

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    Official Symbol
    csqR
    Official Full Name
    DNA-binding transcriptional dual regulator CsqR
    Primary source
    ECOCYC:EG11849
    Locus tag
    b3884
    See related
    ASAP:ABE-0012683
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3877; yihW
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    Genomic context

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    Sequence:
    NC_000913.3 (4074669..4075454)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene 3-sulfolactaldehyde reductase Neighboring gene 6-deoxy-6-sulfofructose kinase Neighboring gene alpha-D-glucose-1-phosphate phosphatase YihX Neighboring gene PF03631 family membrane protein YihY Neighboring gene D-aminoacyl-tRNA deacylase Neighboring gene putative fatty acid biosynthesis enzyme FabY

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Regulatory role of CsqR (YihW) in transcription of the genes for catabolism of the anionic sugar sulfoquinovose (SQ) in Escherichia coli K-12. Shimada T, et al. Microbiology (Reading), 2019 Jan. PMID 30372406
    2. Salmonella produces an O-antigen capsule regulated by AgfD and important for environmental persistence. Gibson DL, et al. J Bacteriol, 2006 Nov. PMID 17079680, Free PMC Article
    3. Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes. Plunkett G 3rd, et al. Nucleic Acids Res, 1993 Jul 25. PMID 8346018, Free PMC Article
    4. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
    5. From the genome sequence to the proteome and back: evaluation of E. coli genome annotation with a 2-D gel-based proteomics approach. Maillet I, et al. Proteomics, 2007 Apr. PMID 17366475

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. YihW functions as a repressor for catabolism of sulfoquinovose.
      Title: Regulatory role of CsqR (YihW) in transcription of the genes for catabolism of the anionic sugar sulfoquinovose (SQ) in Escherichia coli K-12.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables ligand-activated transcription factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of DNA-templated transcription initiation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DNA-binding transcriptional dual regulator CsqR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4074669..4075454
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418320.2 DNA-binding transcriptional dual regulator CsqR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418320.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1V2GJM9
      Conserved Domains (1) summary
      COG1349
      Location:9 → 258
      GlpR; DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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