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    yadE putative polysaccharide deacetylase lipoprotein YadE [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946536, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yadE
    Official Full Name
    putative polysaccharide deacetylase lipoprotein YadE
    Primary source
    ECOCYC:EG11749
    Locus tag
    b0130
    See related
    ASAP:ABE-0000457
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0129
    Summary
    YadE has a predicted 19 aa signal peptide.Paralogous to pgaB. [More information is available at EcoGene: EG11749]. YadE is a hypothetical protein. [More information is available at EcoCyc: EG11749].
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    Genomic context

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    Sequence:
    NC_000913.3 (145081..146310)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative ABC transporter ATP-binding protein YadG Neighboring gene putative ABC transporter membrane subunit YadH Neighboring gene putative PTS enzyme IIA component YadI Neighboring gene aspartate 1-decarboxylase proenzyme Neighboring gene recombination-promoting nuclease RpnC

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
    2. Systematic sequencing of the Escherichia coli genome: analysis of the 2.4-4.1 min (110,917-193,643 bp) region. Fujita N, et al. Nucleic Acids Res, 1994 May 11. PMID 8202364, Free PMC Article
    3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    4. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative polysaccharide deacetylase lipoprotein YadE

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      145081..146310
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414672.1 putative polysaccharide deacetylase lipoprotein YadE [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414672.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7E870
      Conserved Domains (1) summary
      cd10966
      Location:230 → 399
      CE4_yadE_5s; Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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