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    ykfA putative GTP-binding protein YkfA [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 949004, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ykfA
    Official Full Name
    putative GTP-binding protein YkfA
    Primary source
    ECOCYC:G6128
    Locus tag
    b0253
    See related
    ASAP:ABE-0000858
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0255
    Summary
    Paralogous to yeeP and yfjP. [More information is available at EcoGene: EG13339].
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    Genomic context

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    Sequence:
    NC_000913.3 (268097..268960, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene DUF932 domain-containing protein YafZ Neighboring gene putative transcriptional regulator PerR Neighboring gene pseudo Neighboring gene IS30 family transposase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transposition is modulated by a diverse set of host factors in Escherichia coli and is stimulated by nutritional stress. Twiss E, et al. Mol Microbiol, 2005 Sep. PMID 16135227
    2. Temporal gene-expression in Escherichia coli K-12 biofilms. Domka J, et al. Environ Microbiol, 2007 Feb. PMID 17222132
    3. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in tRNA methylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in tRNA wobble uridine modification IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    putative GTP-binding protein YkfA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      268097..268960 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414787.4 putative GTP-binding protein YkfA [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414787.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T5ZPX8
      Conserved Domains (1) summary
      COG3596
      Location:1 → 287
      YeeP; Predicted GTPase [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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