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    ykgF putative amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 944980, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ykgF
    Official Full Name
    putative amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain
    Primary source
    ECOCYC:G6177
    Locus tag
    b0307
    See related
    ASAP:ABE-0001060
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0306
    Summary
    AFMB Structural Genomics target Number (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG13583].
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    Genomic context

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    Sequence:
    NC_000913.3 (322338..323765)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional activator RclR Neighboring gene putative lactate utilization oxidoreductase YkgE Neighboring gene DUF162 domain-containing lactate utilization protein YkgG Neighboring gene uncharacterized protein YkgH Neighboring gene choline dehydrogenase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Towards an effective biosensor for monitoring AD leachate: a knockout E. coli mutant that cannot catabolise lactate. Sweeney J, et al. Appl Microbiol Biotechnol, 2015 Dec. PMID 26272093
    2. Proteome analysis of Escherichia coli using high-performance liquid chromatography and Fourier transform ion cyclotron resonance mass spectrometry. Ihling C, et al. Proteomics, 2005 May. PMID 15852340
    3. Genomic reconstruction of Shewanella oneidensis MR-1 metabolism reveals a previously uncharacterized machinery for lactate utilization. Pinchuk GE, et al. Proc Natl Acad Sci U S A, 2009 Feb 24. PMID 19196979, Free PMC Article
    4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    5. A widely conserved gene cluster required for lactate utilization in Bacillus subtilis and its involvement in biofilm formation. Chai Y, et al. J Bacteriol, 2009 Apr. PMID 19201793, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables 4 iron, 4 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables L-lactate dehydrogenase activity EXP
    Inferred from Experiment
    more info
    		 PubMed 
    enables L-lactate dehydrogenase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables iron-sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within lactate catabolic process EXP
    Inferred from Experiment
    more info
    		 PubMed 
    involved_in lactate catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in lactate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      322338..323765
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414841.1 putative amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414841.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7THK5
      Conserved Domains (1) summary
      TIGR00273
      Location:18 → 453
      TIGR00273; iron-sulfur cluster-binding protein
    Nucleotide Protein
    Heading Accession and Version

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