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    yahD ankyrin repeat-containing protein YahD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947681, updated on 17-Dec-2024

    Summary

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    Official Symbol
    yahD
    Official Full Name
    ankyrin repeat-containing protein YahD
    Primary source
    ECOCYC:G6183
    Locus tag
    b0318
    See related
    ASAP:ABE-0001095
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0316
    Summary
    YahD shows some similarity to human RNase L due to the presence of ankyrin repeats with conserved GKT motifs . [More information is available at EcoCyc: G6183].
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    Genomic context

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    Sequence:
    NC_000913.3 (335280..335885)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative LysR-type DNA-binding transcriptional regulator YahB Neighboring gene uncharacterized protein YahC Neighboring gene DUF2877 domain-containing protein YahE Neighboring gene putative acyl-CoA synthetase YahF Neighboring gene DUF1116 domain-containing protein YahG

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression of interferon-inducible recombinant human RNase L causes RNA degradation and inhibition of cell growth in Escherichia coli. Pandey M, et al. Biochem Biophys Res Commun, 2004 Apr 30. PMID 15063798
    2. Transposition is modulated by a diverse set of host factors in Escherichia coli and is stimulated by nutritional stress. Twiss E, et al. Mol Microbiol, 2005 Sep. PMID 16135227
    3. Screen for genes involved in radiation survival of Escherichia coli and construction of a reference database. Sargentini NJ, et al. Mutat Res, 2016 Nov-Dec. PMID 27718375
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within response to radiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ankyrin repeat-containing protein YahD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      335280..335885
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414852.1 ankyrin repeat-containing protein YahD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414852.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2X1KFI3
      Conserved Domains (3) summary
      COG0666
      Location:4 → 146
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:108 → 136
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:112 → 201
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version

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