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    rrrD lysozyme [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947539, updated on 3-Dec-2024

    Summary

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    Official Symbol
    rrrD
    Official Full Name
    lysozyme
    Primary source
    ECOCYC:G6310
    Locus tag
    b0555
    See related
    ASAP:ABE-0001898
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0546; lycV; ybcS
    Summary
    ArrD(YbcS) and ArrQ(YdfQ) are distant homologs of the phage lambda lysozyme R protein, as evidenced by all three matching to the pfam00959 profile (E values for pfam00959 hits using NCBI Conserved Domain (CD) Search: [More information is available at EcoGene: EG13635]. YbcS is an endolysin encoded by the cryptic lambdoid prophage DLP12 . [More information is available at EcoCyc: G6310].
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    Genomic context

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    Sequence:
    NC_000913.3 (577613..578110)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene prophage antitermination protein Q homolog QuuD Neighboring gene pseudo Neighboring gene IS5 family transposase and trans-activator Neighboring gene putative phage lysis protein Neighboring gene putative prophage endopeptidase RzpD Neighboring gene putative prophage lysis lipoprotein RzoD Neighboring gene prophage lipoprotein BorD

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Subclassification and targeted characterization of prophage-encoded two-component cell lysis cassette. Srividhya KV, et al. J Biosci, 2007 Aug. PMID 17914239
    2. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    3. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables hydrolase activity, acting on glycosyl bonds IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables lysozyme activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables lysozyme activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables lysozyme activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell wall macromolecule catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in defense response to bacterium IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in killing of cells of another organism IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in peptidoglycan catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within viral release from host cell by cytolysis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysozyme
    NP_415087.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      577613..578110
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415087.1 lysozyme [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415087.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A828N646
      Conserved Domains (1) summary
      cd16900
      Location:23 → 161
      endolysin_R21-like; endolysin R21-like proteins
    Nucleotide Protein
    Heading Accession and Version

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