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    ybiT putative ATP-binding protein YbiT [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945440, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ybiT
    Official Full Name
    putative ATP-binding protein YbiT
    Primary source
    ECOCYC:G6423
    Locus tag
    b0820
    See related
    ASAP:ABE-0002801
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0810
    Summary
    E. chrysanthemi ortholog plays a role in planta infective fitness. [More information is available at EcoGene: EG13325]. YbiT is predicted to be an ABC transporter protein . [More information is available at EcoCyc: G6423].
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    Genomic context

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    Sequence:
    NC_000913.3 (855963..857555)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional dual regulator MntR Neighboring gene putative transporter YbiR Neighboring gene L,D-transpeptidase LdtB Neighboring gene DUF1479 domain-containing protein YbiU Neighboring gene sugar phosphatase YbiV

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The ybiT gene of Erwinia chrysanthemi codes for a putative ABC transporter and is involved in competitiveness against endophytic bacteria during infection. Llama-Palacios A, et al. Appl Environ Microbiol, 2002 Apr. PMID 11916677, Free PMC Article
    2. Genome-wide transcriptional analysis of the cold shock response in wild-type and cold-sensitive, quadruple-csp-deletion strains of Escherichia coli. Phadtare S, et al. J Bacteriol, 2004 Oct. PMID 15466053, Free PMC Article
    3. From the genome sequence to the proteome and back: evaluation of E. coli genome annotation with a 2-D gel-based proteomics approach. Maillet I, et al. Proteomics, 2007 Apr. PMID 17366475
    4. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
    5. The Escherichia coli ATP-binding cassette (ABC) proteins. Linton KJ, et al. Mol Microbiol, 1998 Apr. PMID 9593292

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables ATP binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP binding RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative ATP-binding protein YbiT

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      855963..857555
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415341.1 putative ATP-binding protein YbiT [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415341.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7A6MMK1
      Conserved Domains (1) summary
      PRK15064
      Location:1 → 530
      PRK15064; ABC transporter ATP-binding protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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