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    ydaS toxin YdaS [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945923, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ydaS
    Official Full Name
    toxin YdaS
    Primary source
    ECOCYC:G6681
    Locus tag
    b1357
    See related
    ASAP:ABE-0004552
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1355
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    Genomic context

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    Sequence:
    NC_000913.3 (1420365..1420661)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein YdaG Neighboring gene DNA-binding transcriptional repressor RacR Neighboring gene protein YdaT Neighboring gene DUF1376 domain-containing protein YdaU

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RASTA-Bacteria: a web-based tool for identifying toxin-antitoxin loci in prokaryotes. Sevin EW, et al. Genome Biol, 2007. PMID 17678530, Free PMC Article
    2. Three new RelE-homologous mRNA interferases of Escherichia coli differentially induced by environmental stresses. Christensen-Dalsgaard M, et al. Mol Microbiol, 2010 Jan. PMID 19943910, Free PMC Article
    3. Systems based mapping demonstrates that recovery from alkylation damage requires DNA repair, RNA processing, and translation associated networks. Rooney JP, et al. Genomics, 2009 Jan. PMID 18824089, Free PMC Article
    4. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    toxin YdaS

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1420365..1420661
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415875.1 toxin YdaS [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415875.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAX0PCN6
      Conserved Domains (1) summary
      COG4197
      Location:4 → 98
      YdaS; DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily [Transcription]
    Nucleotide Protein
    Heading Accession and Version

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