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    ydgC GlpM family protein [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945156, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydgC
    Official Full Name
    GlpM family protein
    Primary source
    ECOCYC:G6863
    Locus tag
    b1607
    See related
    ASAP:ABE-0005366
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1602
    Summary
    Sequence analysis and charge mutation studies indicate that YdgC is a dual-topology protein which forms an antiparallel homodimer or higher oligomer within the inner membrane . [More information is available at EcoCyc: G6863].
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    Genomic context

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    Sequence:
    NC_000913.3 (1681695..1682030, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF1471 domain-containing protein YdgH Neighboring gene putative arginine:ornithine antiporter Neighboring gene dihydromonapterin reductase Neighboring gene DNA-binding transcriptional regulator RstA Neighboring gene sensory histidine kinase RstB

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and evolution of dual-topology membrane proteins. Rapp M, et al. Nat Struct Mol Biol, 2006 Feb. PMID 16429150
    2. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
    3. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
    4. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
    5. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GlpM family protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1681695..1682030 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416124.1 GlpM family protein [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416124.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAN3IK59
      Conserved Domains (1) summary
      pfam06942
      Location:5 → 111
      GlpM; GlpM protein
    Nucleotide Protein
    Heading Accession and Version

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