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    ydiF putative acetate-CoA transferase YdiF [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946211, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ydiF
    Official Full Name
    putative acetate-CoA transferase YdiF
    Primary source
    ECOCYC:EG12432
    Locus tag
    b1694
    See related
    ASAP:ABE-0005656
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1692
    Summary
    Family I CoA transferase. [More information is available at EcoGene: EG12432]. Based on sequence similarity, YdiF is predicted to be an acetate CoA-transferase . [More information is available at EcoCyc: EG12432].
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    Genomic context

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    Sequence:
    NC_000913.3 (1775587..1777182)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene quinate/shikimate dehydrogenase Neighboring gene 3-dehydroquinate dehydratase Neighboring gene putative acyl-CoA dehydrogenase YdiO Neighboring gene putative DNA-binding transcriptional regulator YdiP

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Crystallographic trapping of the glutamyl-CoA thioester intermediate of family I CoA transferases. Rangarajan ES, et al. J Biol Chem, 2005 Dec 30. PMID 16253988
    2. The overexpression and complete amino acid sequence of Escherichia coli 3-dehydroquinase. Duncan K, et al. Biochem J, 1986 Sep 1. PMID 3541912, Free PMC Article
    3. An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). Reed JL, et al. Genome Biol, 2003. PMID 12952533, Free PMC Article
    4. Intrinsic and extrinsic approaches for detecting genes in a bacterial genome. Borodovsky M, et al. Nucleic Acids Res, 1994 Nov 11. PMID 7984428, Free PMC Article
    5. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables CoA-transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables acetate CoA-transferase activity IC
    Inferred by Curator
    more info
    		 PubMed 
    enables acetate CoA-transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables acetate CoA-transferase activity ISO
    Inferred from Sequence Orthology
    more info
    		 PubMed 
    enables acetate CoA-transferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in ketone body catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein homotetramerization ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in short-chain fatty acid metabolic process ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    putative acetate-CoA transferase YdiF
    NP_416209.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1775587..1777182
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416209.1 putative acetate-CoA transferase YdiF [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416209.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A775TXC9, A0A8S7EBN3, A0A8S7JRU4
      Conserved Domains (1) summary
      COG4670
      Location:11 → 531
      YdiF; Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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