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    yedD lipoprotein YedD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 949082, updated on 17-Dec-2024

    Summary

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    Official Symbol
    yedD
    Official Full Name
    lipoprotein YedD
    Primary source
    ECOCYC:EG11659
    Locus tag
    b1928
    See related
    ASAP:ABE-0006416
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1927
    Summary
    First 15 aa are a type II signal peptide. [More information is available at EcoGene: EG11659].
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    Genomic context

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    Sequence:
    NC_000913.3 (2007677..2008090, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene flagellar biosynthesis protein FliS Neighboring gene flagellar biosynthesis protein FliT Neighboring gene alpha-amylase Neighboring gene putative selenium transporter YedE Neighboring gene putative sulfurtransferase YedF Neighboring gene genome maintenance protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Organization of the Escherichia coli and Salmonella typhimurium chromosomes between flagellar regions IIIa and IIIb, including a large non-coding region. Raha M, et al. J Gen Microbiol, 1993 Jul. PMID 8371104
    2. Quantifying changes in the thiol redox proteome upon oxidative stress in vivo. Leichert LI, et al. Proc Natl Acad Sci U S A, 2008 Jun 17. PMID 18287020, Free PMC Article
    3. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    4. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
    5. A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map. Itoh T, et al. DNA Res, 1996 Dec 31. PMID 9097040

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    lipoprotein YedD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2007677..2008090 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416438.1 lipoprotein YedD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416438.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1X3I570, A0A1X3IZG1, A0A1X3JGU9, A0A7I6H4E7, A0A829L9D4, A0A979H3N6, A0AAN3SGT6, A7ZN54, F4T0T9
      Conserved Domains (1) summary
      PRK10397
      Location:18 → 137
      PRK10397; lipoprotein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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