U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    intS prophage CPS-53 integrase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946821, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    intS
    Official Full Name
    prophage CPS-53 integrase
    Primary source
    ECOCYC:G7218
    Locus tag
    b2349
    See related
    ASAP:ABE-0007756
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2343; intC; yfdB
    Summary
    IntS is the integrase required for both integration and excision of the prophage KpLE1 . [More information is available at EcoCyc: G7218].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (2466545..2467702)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene inner membrane protein YfdC Neighboring gene tRNA-Arg Neighboring gene putative bactoprenol-linked glucose translocase Neighboring gene bactoprenol glucosyl transferase Neighboring gene serotype-specific glucosyl transferase YfdI

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Regulation of the int gene of bacteriophage lambda: activation by the cII and cIII gene products and the role of the Pi and Pl promoters. Oppenheim A, et al. Mol Gen Genet, 1978 Sep 20. PMID 362165
    2. Protein binding sites involved in the assembly of the KplE1 prophage intasome. Panis G, et al. Virology, 2010 Aug 15. PMID 20494389
    3. Control and regulation of KplE1 prophage site-specific recombination: a new recombination module analyzed. Panis G, et al. J Biol Chem, 2007 Jul 27. PMID 17545146
    4. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables identical protein binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables prophage integrase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA integration IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in establishment of integrated proviral latency IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in provirus excision IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within provirus excision IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in symbiont entry into host cell IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in viral genome integration into host DNA IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    prophage CPS-53 integrase

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2466545..2467702
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416850.1 prophage CPS-53 integrase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416850.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8H9XMJ2
      Conserved Domains (1) summary
      PRK09692
      Location:2 → 380
      PRK09692; integrase; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.