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    ppdC prepilin-type N-terminal cleavage/methylation domain-containing protein PpdC [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945797, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ppdC
    Official Full Name
    prepilin-type N-terminal cleavage/methylation domain-containing protein PpdC
    Primary source
    ECOCYC:EG11154
    Locus tag
    b2823
    See related
    ASAP:ABE-0009257
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2819; ygdA
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    Genomic context

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    Sequence:
    NC_000913.3 (2962441..2962764, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene exodeoxyribonuclease V subunit RecB Neighboring gene protease 3 Neighboring gene exodeoxyribonuclease V subunit RecC Neighboring gene DUF2509 domain-containing protein YgdB Neighboring gene prepilin-type N-terminal cleavage/methylation domain-containing protein PpdB Neighboring gene prepilin-type N-terminal cleavage/methylation domain-containing protein PpdA Neighboring gene thymidylate synthase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Common components in the assembly of type 4 fimbriae, DNA transfer systems, filamentous phage and protein-secretion apparatus: a general system for the formation of surface-associated protein complexes. Hobbs M, et al. Mol Microbiol, 1993 Oct. PMID 7934814
    2. Complete nucleotide sequence of the Escherichia coli recC gene and of the thyA-recC intergenic region. Finch PW, et al. Nucleic Acids Res, 1986 Jun 11. PMID 3520484, Free PMC Article
    3. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article
    4. Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. Inoue T, et al. J Bacteriol, 2007 Feb. PMID 17122336, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prepilin-type N-terminal cleavage/methylation domain-containing protein PpdC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2962441..2962764 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417300.1 prepilin-type N-terminal cleavage/methylation domain-containing protein PpdC [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417300.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1X3JDQ0
      Conserved Domains (1) summary
      PRK10332
      Location:1 → 107
      PRK10332; prepilin-type N-terminal cleavage/methylation domain-containing protein
    Nucleotide Protein
    Heading Accession and Version

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