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    ygiS putative deoxycholate binding periplasmic protein [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947140, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ygiS
    Official Full Name
    putative deoxycholate binding periplasmic protein
    Primary source
    ECOCYC:G7570
    Locus tag
    b3020
    See related
    ASAP:ABE-0009920
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3011
    Summary
    First 20 aa are predicted to be a type I signal peptide. [More information is available at EcoGene: EG13021]. YgiS is an uncharacterized protein in the ABC superfamily of transporters . [More information is available at EcoCyc: G7570].
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    Genomic context

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    Sequence:
    NC_000913.3 (3166111..3167718, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase PlsC Neighboring gene DNA topoisomerase IV subunit A Neighboring gene antitoxin of the MqsRA toxin-antitoxin system/DNA-binding transcriptional repressor MqsA Neighboring gene mRNA interferase toxin MqsR

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The MqsR/MqsA toxin/antitoxin system protects Escherichia coli during bile acid stress. Kwan BW, et al. Environ Microbiol, 2015 Sep. PMID 25534751
    2. Proteome analysis to assess physiological changes in Escherichia coli grown under glucose-limited fed-batch conditions. Raman B, et al. Biotechnol Bioeng, 2005 Nov 5. PMID 16180237
    3. Comparison of the large-scale periplasmic proteomes of the Escherichia coli K-12 and B strains. Han MJ, et al. J Biosci Bioeng, 2014 Apr. PMID 24140104
    4. Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography. Fountoulakis M, et al. Electrophoresis, 1999 Aug. PMID 10493123
    5. Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. Saurin W, et al. J Mol Evol, 1999 Jan. PMID 9873074

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables peptide transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within bile acid and bile salt transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in peptide transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of ATP-binding cassette (ABC) transporter complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in outer membrane-bounded periplasmic space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in outer membrane-bounded periplasmic space IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in outer membrane-bounded periplasmic space IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in periplasmic space IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative deoxycholate binding periplasmic protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3166111..3167718 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417492.1 putative deoxycholate binding periplasmic protein [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417492.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6M9X3P6
      Conserved Domains (1) summary
      PRK09755
      Location:1 → 535
      PRK09755; ABC transporter substrate-binding protein
    Nucleotide Protein
    Heading Accession and Version

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