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    ygiW BOF family protein YgiW [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946051, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ygiW
    Official Full Name
    BOF family protein YgiW
    Primary source
    ECOCYC:G7574
    Locus tag
    b3024
    See related
    ASAP:ABE-0009930
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3015; visP
    Summary
    ydeI and ygiW are paralogs. [More information is available at EcoGene: EG13025]. Targeting of YgiW to the Sec-translocase for transport across the inner membrane is SecB-dependent . [More information is available at EcoCyc: G7574].
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    Genomic context

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    Sequence:
    NC_000913.3 (3169284..3169676, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene mRNA interferase toxin MqsR Neighboring gene DNA-binding transcriptional repressor YgiV Neighboring gene DNA-binding transcriptional activator QseB Neighboring gene sensor histidine kinase QseC Neighboring gene DUF2645 domain-containing inner membrane protein YgiZ

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation of small RNA-binding proteins from E. coli: evidence for frequent interaction of RNAs with RNA polymerase. Windbichler N, et al. RNA Biol, 2008 Jan-Mar. PMID 18388495
    2. Defining the role of the Escherichia coli chaperone SecB using comparative proteomics. Baars L, et al. J Biol Chem, 2006 Apr 14. PMID 16352602
    3. Identification and functional analysis of 'hypothetical' genes expressed in Haemophilus influenzae. Kolker E, et al. Nucleic Acids Res, 2004. PMID 15121896, Free PMC Article
    4. BOF: a novel family of bacterial OB-fold proteins. Ginalski K, et al. FEBS Lett, 2004 Jun 4. PMID 15178340
    5. Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Link AJ, et al. Electrophoresis, 1997 Aug. PMID 9298646

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. N-terminus verified by Edman degradation on mature peptide
      Title: Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to cadmium ion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within cellular response to hydrogen peroxide IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within single-species biofilm formation on inanimate substrate IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in outer membrane-bounded periplasmic space EXP
    Inferred from Experiment
    more info
    		 PubMed 
    located_in outer membrane-bounded periplasmic space RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in periplasmic space IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    BOF family protein YgiW

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3169284..3169676 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417496.1 BOF family protein YgiW [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417496.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T6BMJ8
      Conserved Domains (1) summary
      TIGR00156
      Location:2 → 127
      TIGR00156; TIGR00156 family protein
    Nucleotide Protein
    Heading Accession and Version

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