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    yiaF DUF3053 domain-containing protein YiaF [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948072, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yiaF
    Official Full Name
    DUF3053 domain-containing protein YiaF
    Primary source
    ECOCYC:EG12273
    Locus tag
    b3554
    See related
    ASAP:ABE-0011606
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3541
    Summary
    YiaF has been identified as a membrane-associated protein by 2D-MS, with a non-uniform membrane distribution, indicating both polar and septal bias. [More information is available at EcoGene: EG12273]. The distribution of the YiaF protein in the membrane is patchy with a polar and septal bias . [More information is available at EcoCyc: EG12273].
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    Genomic context

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    Sequence:
    NC_000913.3 (3718334..3719044, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene PF13488 family lipoprotein YiaD Neighboring gene glyoxylate reductase Neighboring gene putative DNA-binding transcriptional regulator YiaG Neighboring gene cold shock protein CspA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of commensal Escherichia coli genes involved in biofilm resistance to pathogen colonization. Da Re S, et al. PLoS One, 2013. PMID 23667443, Free PMC Article
    2. Proteomic screening and identification of differentially distributed membrane proteins in Escherichia coli. Lai EM, et al. Mol Microbiol, 2004 May. PMID 15130122
    3. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    4. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
    5. Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes. Sofia HJ, et al. Nucleic Acids Res, 1994 Jul 11. PMID 8041620, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within biological process involved in symbiotic interaction IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DUF3053 domain-containing protein YiaF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3718334..3719044 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418010.2 DUF3053 domain-containing protein YiaF [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418010.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A444RCQ7
      Conserved Domains (1) summary
      pfam11254
      Location:14 → 231
      DUF3053; Protein of unknown function (DUF3053)
    Nucleotide Protein
    Heading Accession and Version

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