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    yjaH DUF1481 domain-containing protein YjaH [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948508, updated on 17-Dec-2024

    Summary

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    Official Symbol
    yjaH
    Official Full Name
    DUF1481 domain-containing protein YjaH
    Primary source
    ECOCYC:EG11917
    Locus tag
    b4001
    See related
    ASAP:ABE-0013079
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3993
    Summary
    First 30 aa are predicted to be a type II signal peptide. [More information is available at EcoGene: EG11917]. Sequence similarity suggests that YjaH may contain -barrel structure(s) . [More information is available at EcoCyc: EG11917].
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    Genomic context

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    Sequence:
    NC_000913.3 (4200566..4201261)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF416 domain-containing protein YjaG Neighboring gene DNA-binding protein HU-alpha Neighboring gene signaling pathway modulator ZraP Neighboring gene sensor histidine kinase ZraS Neighboring gene DNA-binding transcriptional activator ZraR

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
    2. Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes. Blattner FR, et al. Nucleic Acids Res, 1993 Nov 25. PMID 8265357, Free PMC Article
    3. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    4. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
    5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    DUF1481 domain-containing protein YjaH

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4200566..4201261
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418429.1 DUF1481 domain-containing protein YjaH [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418429.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7EKN9
      Conserved Domains (1) summary
      pfam07356
      Location:42 → 227
      DUF1481; Protein of unknown function (DUF1481)
    Nucleotide Protein
    Heading Accession and Version

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