U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    yafC DNA-binding transcriptional regulator YafC [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947507, updated on 17-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    yafC
    Official Full Name
    DNA-binding transcriptional regulator YafC
    Primary source
    ECOCYC:EG11649
    Locus tag
    b0208
    See related
    ASAP:ABE-0000694
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0208
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (229967..230881, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene tRNA-Asp Neighboring gene methylglyoxal reductase DkgB Neighboring gene endonuclease/exonuclease/phosphatase domain-containing protein YafD Neighboring gene putative S-adenosylmethionine-dependent methyltransferase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Role of the Escherichia coli Tat pathway in outer membrane integrity. Ize B, et al. Mol Microbiol, 2003 Jun. PMID 12787348
    2. Escherichia coli genes and pathways involved in surviving extreme exposure to ionizing radiation. Byrne RT, et al. J Bacteriol, 2014 Oct. PMID 25049088, Free PMC Article
    3. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    4. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription cis-regulatory region binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to ionizing radiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    DNA-binding transcriptional regulator YafC

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      229967..230881 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414744.1 DNA-binding transcriptional regulator YafC [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414744.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376FQY2
      Conserved Domains (2) summary
      cd08478
      Location:91 → 289
      PBP2_CrgA; The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA, contains the type 2 periplasmic binding domain
      PRK11242
      Location:11 → 144
      PRK11242; DNA-binding transcriptional regulator CynR; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.