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    yafD endonuclease/exonuclease/phosphatase domain-containing protein YafD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946286, updated on 17-Dec-2024

    Summary

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    Official Symbol
    yafD
    Official Full Name
    endonuclease/exonuclease/phosphatase domain-containing protein YafD
    Primary source
    ECOCYC:EG11650
    Locus tag
    b0209
    See related
    ASAP:ABE-0000700
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0209
    Summary
    YafD has similarity to Escherichia coli YadD, which is encoded within the panBCD gene cluster . [More information is available at EcoCyc: EG11650].
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    Genomic context

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    Sequence:
    NC_000913.3 (231122..231922)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene tRNA-Asp Neighboring gene methylglyoxal reductase DkgB Neighboring gene DNA-binding transcriptional regulator YafC Neighboring gene putative S-adenosylmethionine-dependent methyltransferase Neighboring gene membrane-bound lytic murein transglycosylase D

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization and sequence of the Escherichia coli panBCD gene cluster. Merkel WK, et al. FEMS Microbiol Lett, 1996 Oct 1. PMID 8837478
    2. Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress. Nonaka G, et al. Genes Dev, 2006 Jul 1. PMID 16818608, Free PMC Article
    3. Molecular cloning and DNA sequence of dniR, a gene affecting anaerobic expression of the Escherichia coli hexaheme nitrite reductase. Kajie S, et al. FEMS Microbiol Lett, 1991 Oct 1. PMID 1663890
    4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    endonuclease/exonuclease/phosphatase domain-containing protein YafD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      231122..231922
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414745.1 endonuclease/exonuclease/phosphatase domain-containing protein YafD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414745.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376ZM76, A0AAQ1T9B3
      Conserved Domains (1) summary
      PRK05421
      Location:1 → 263
      PRK05421; endonuclease/exonuclease/phosphatase family protein
    Nucleotide Protein
    Heading Accession and Version

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