U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    yagU DUF1440 domain-containing inner membrane protein YagU [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945677, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    yagU
    Official Full Name
    DUF1440 domain-containing inner membrane protein YagU
    Primary source
    ECOCYC:G6158
    Locus tag
    b0287
    See related
    ASAP:ABE-0000995
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0286
    Summary
    A yagU mutation is 3-fold less resistant to pH 2 (Hayes, 2006). [More information is available at EcoGene: EG13560]. Membrane topology predictions using experimentally determined C terminus locations indicate that YagU has 4 transmembrane helices and the C-terminus is located in the cytoplasm . [More information is available at EcoCyc: G6158].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (302991..303605)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene aldehyde dehydrogenase: molybdenum cofactor-binding subunit Neighboring gene aldehyde dehydrogenase, FAD-binding subunit Neighboring gene aldehyde dehydrogenase, Fe-S subunit Neighboring gene putative metal-chelating domain-containing protein YkgJ Neighboring gene putative fimbrial chaperone EcpE Neighboring gene fimbrial adhesin EcpD

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Rapid acid treatment of Escherichia coli: transcriptomic response and recovery. Kannan G, et al. BMC Microbiol, 2008 Feb 26. PMID 18302792, Free PMC Article
    2. Oxygen limitation modulates pH regulation of catabolism and hydrogenases, multidrug transporters, and envelope composition in Escherichia coli K-12. Hayes ET, et al. BMC Microbiol, 2006 Oct 6. PMID 17026754, Free PMC Article
    3. Repression of small toxic protein synthesis by the Sib and OhsC small RNAs. Fozo EM, et al. Mol Microbiol, 2008 Dec. PMID 18710431, Free PMC Article
    4. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
    5. Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. Zhang N, et al. Proteomics, 2007 Feb. PMID 17309111

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within response to acidic pH IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to acidic pH IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    DUF1440 domain-containing inner membrane protein YagU

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      302991..303605
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414821.1 DUF1440 domain-containing inner membrane protein YagU [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414821.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S0G3D2
      Conserved Domains (1) summary
      COG3477
      Location:3 → 200
      YagU; Uncharacterized membrane protein YagU, involved in acid resistance, DUF1440 family [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.