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    ybdJ DUF1158 domain-containing protein YbdJ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947183, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ybdJ
    Official Full Name
    DUF1158 domain-containing protein YbdJ
    Primary source
    ECOCYC:G6325
    Locus tag
    b0580
    See related
    ASAP:ABE-0001988
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0572
    Summary
    Probable false positive lipoprotein prediction, Cys not conserved, 2 CM TMs predicted. [More information is available at EcoGene: EG13643].
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    Genomic context

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    Sequence:
    NC_000913.3 (605951..606199, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene NAD(P)H-dependent nitroreductase NfsB Neighboring gene PF04237 family protein YbdF Neighboring gene putative glutamate--cysteine ligase 2 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    2. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
    3. A novel family of Escherichia coli toxin-antitoxin gene pairs. Brown JM, et al. J Bacteriol, 2003 Nov. PMID 14594833, Free PMC Article
    4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DUF1158 domain-containing protein YbdJ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      605951..606199 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415112.1 DUF1158 domain-containing protein YbdJ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415112.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A3L9GRR4
      Conserved Domains (1) summary
      pfam06643
      Location:2 → 79
      DUF1158; Protein of unknown function (DUF1158)
    Nucleotide Protein
    Heading Accession and Version

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