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    ycfJ PF05433 family protein YcfJ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945977, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ycfJ
    Official Full Name
    PF05433 family protein YcfJ
    Primary source
    ECOCYC:EG12444
    Locus tag
    b1110
    See related
    ASAP:ABE-0003752
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1096
    Summary
    YcfJ is homologous to UmoD (P.m.), which upregulates flhDC in P. mirabilis. [More information is available at EcoGene: EG12444]. YcfJ has similarity to Proteus mirabilis UmoD, which is involved in in flagellar synthesis, swarming, and cell elongation . [More information is available at EcoCyc: EG12444].
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    Genomic context

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    Sequence:
    NC_000913.3 (1167599..1168138)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene PF05728 family protein YcfP Neighboring gene NADH:quinone oxidoreductase II Neighboring gene DNA-binding transcriptional repressor ComR Neighboring gene DUF1471 domain-containing multiple stress resistance outer membrane protein BhsA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nucleotide sequence coding for the respiratory NADH dehydrogenase of Escherichia coli. UUG initiation codon. Young IG, et al. Eur J Biochem, 1981 May. PMID 6265208
    2. Novel genes that upregulate the Proteus mirabilis flhDC master operon controlling flagellar biogenesis and swarming. Dufour A, et al. Mol Microbiol, 1998 Aug. PMID 9723914
    3. Intrinsic and extrinsic approaches for detecting genes in a bacterial genome. Borodovsky M, et al. Nucleic Acids Res, 1994 Nov 11. PMID 7984428, Free PMC Article
    4. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article
    5. Global impact of mature biofilm lifestyle on Escherichia coli K-12 gene expression. Beloin C, et al. Mol Microbiol, 2004 Feb. PMID 14731270

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    involved_in regulation of single-species biofilm formation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within regulation of single-species biofilm formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PF05433 family protein YcfJ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1167599..1168138
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415628.1 PF05433 family protein YcfJ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415628.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6M9WX94
      Conserved Domains (1) summary
      PRK11280
      Location:7 → 176
      PRK11280; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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