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    ldtC L,D-transpeptidase LdtC [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945666, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ldtC
    Official Full Name
    L,D-transpeptidase LdtC
    Primary source
    ECOCYC:G6571
    Locus tag
    b1113
    See related
    ASAP:ABE-0003760
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1099; ycfS
    Summary
    ErfK family. [More information is available at EcoGene: EG13437]. YcfS is an L,D-transpeptidase responsible removal of the D-alanine residue of peptidoglycan tetrapeptide stems and attachment of the lysine residue of Braun lipoprotein to the meso-diaminopimelyl (DAP) residue of the resulting tripeptide. [More information is available at EcoCyc: G6571].
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    Genomic context

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    Sequence:
    NC_000913.3 (1169412..1170374, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional repressor ComR Neighboring gene DUF1471 domain-containing multiple stress resistance outer membrane protein BhsA Neighboring gene ncRNA Neighboring gene transcription-repair coupling factor Neighboring gene inner membrane protein YcfT

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Insight from TonB hybrid proteins into the mechanism of iron transport through the outer membrane. Kaserer WA, et al. J Bacteriol, 2008 Jun. PMID 18390658, Free PMC Article
    2. Role of the extracytoplasmic function protein family sigma factor RpoE in metal resistance of Escherichia coli. Egler M, et al. J Bacteriol, 2005 Apr. PMID 15774872, Free PMC Article
    3. Global impact of sdiA amplification revealed by comprehensive gene expression profiling of Escherichia coli. Wei Y, et al. J Bacteriol, 2001 Apr. PMID 11244066, Free PMC Article
    4. pH regulates genes for flagellar motility, catabolism, and oxidative stress in Escherichia coli K-12. Maurer LM, et al. J Bacteriol, 2005 Jan. PMID 15601715, Free PMC Article
    5. Identification of the L,D-transpeptidases responsible for attachment of the Braun lipoprotein to Escherichia coli peptidoglycan. Magnet S, et al. J Bacteriol, 2007 May. PMID 17369299, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Escherichia coli Ldt(fm) homologues are responsible for the attachment of the Braun lipoprotein to murein
      Title: Identification of the L,D-transpeptidases responsible for attachment of the Braun lipoprotein to Escherichia coli peptidoglycan.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General protein information

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    Preferred Names
    L,D-transpeptidase LdtC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1169412..1170374 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415631.1 L,D-transpeptidase LdtC [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415631.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7T2IZW6
      Conserved Domains (1) summary
      PRK10260
      Location:30 → 308
      PRK10260; L,D-transpeptidase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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