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    ynbE lipoprotein YnbE [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945946, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ynbE
    Official Full Name
    lipoprotein YnbE
    Primary source
    ECOCYC:G6704
    Locus tag
    b1382
    See related
    ASAP:ABE-0004625
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1379
    Summary
    First 16 aa are a type II signal peptide. [More information is available at EcoGene: EG14298].
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    Genomic context

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    Sequence:
    NC_000913.3 (1445687..1445872)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF333 domain-containing protein YdbJ Neighboring gene lipoprotein implicated in Novobiocin resistance Neighboring gene D-lactate dehydrogenase Neighboring gene putative phospholipid transport factor YdbH Neighboring gene DUF1318 domain-containing protein YdbL Neighboring gene DNA-binding transcriptional activator FeaR

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. YdbH and YnbE form an intermembrane bridge to maintain lipid homeostasis in the outer membrane of Escherichia coli. Kumar S, et al. Proc Natl Acad Sci U S A, 2024 May 21. PMID 38748582, Free PMC Article
    2. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    3. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. YdbH and YnbE form an intermembrane bridge to maintain lipid homeostasis in the outer membrane of Escherichia coli.
      Title: YdbH and YnbE form an intermembrane bridge to maintain lipid homeostasis in the outer membrane of Escherichia coli.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    General protein information

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    Preferred Names
    lipoprotein YnbE

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1445687..1445872
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415900.1 lipoprotein YnbE [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415900.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A377E485
      Conserved Domains (1) summary
      pfam13617
      Location:26 → 59
      Lipoprotein_19; YnbE-like lipoprotein
    Nucleotide Protein
    Heading Accession and Version

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