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    sutR DNA-binding transcriptional dual regulator SutR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946000, updated on 3-Dec-2024

    Summary

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    Official Symbol
    sutR
    Official Full Name
    DNA-binding transcriptional dual regulator SutR
    Primary source
    ECOCYC:G6745
    Locus tag
    b1434
    See related
    ASAP:ABE-0004783
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1428; ydcN
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    Genomic context

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    Sequence:
    NC_000913.3 (1506172..1506708)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative RNA-guided DNA endonuclease InsQ Neighboring gene putative transport protein YdcO Neighboring gene 23S rRNA 5-hydroxycytidine C2501 synthase Neighboring gene DUF2554 domain-containing protein YncJ

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The National Center for Biotechnology Information's Protein Clusters Database. Klimke W, et al. Nucleic Acids Res, 2009 Jan. PMID 18940865, Free PMC Article
    2. Regulatory role of transcription factor SutR (YdcN) in sulfur utilization in Escherichia coli. Yamamoto K, et al. Microbiology (Reading), 2015 Jan. PMID 25406449
    3. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
    4. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within negative regulation of DNA-templated transcription IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    DNA-binding transcriptional dual regulator SutR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1506172..1506708
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415951.1 DNA-binding transcriptional dual regulator SutR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415951.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376WZS8
      Conserved Domains (2) summary
      cd00093
      Location:12 → 66
      HTH_XRE; Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.
      cd02209
      Location:85 → 174
      cupin_XRE_C; XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain
    Nucleotide Protein
    Heading Accession and Version

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