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    ynfH putative menaquinol dehydrogenase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945822, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ynfH
    Official Full Name
    putative menaquinol dehydrogenase
    Primary source
    ECOCYC:G6848
    Locus tag
    b1590
    See related
    ASAP:ABE-0005311
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1585
    Summary
    The physiological substrate and relevance of the YnfFGH S- and N-oxide reductase is unknown. [More information is available at EcoGene: EG13846]. YnfH contains eight potential transmembrane helices and is similar to DmsC, the membrane anchor subunit of the dimethyl sulfoxide reductase heterotrimer. [More information is available at EcoCyc: G6848].
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    Genomic context

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    Sequence:
    NC_000913.3 (1663609..1664463)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative selenate reductase YnfF Neighboring gene putative oxidoreductase YnfG Neighboring gene redox enzyme maturation protein DmsD Neighboring gene putative chloride:H(+) antiporter ClcB Neighboring gene dethiobiotin synthetase BidA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Activation and repression at the Escherichia coli ynfEFGHI operon promoter. Xu M, et al. J Bacteriol, 2009 May. PMID 19251855, Free PMC Article
    2. A genetic analysis of in vivo selenate reduction by Salmonella enterica serovar Typhimurium LT2 and Escherichia coli K12. Guymer D, et al. Arch Microbiol, 2009 Jun. PMID 19415239
    3. The Escherichia coli ynfEFGHI operon encodes polypeptides which are paralogues of dimethyl sulfoxide reductase (DmsABC). Lubitz SP, et al. Arch Biochem Biophys, 2003 Oct 15. PMID 14522592
    4. TCDB: the Transporter Classification Database for membrane transport protein analyses and information. Saier MH Jr, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381841, Free PMC Article
    5. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables dimethyl sulfoxide reductase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in anaerobic electron transport chain IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in anaerobic respiration IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in anaerobic respiration NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of dimethyl sulfoxide reductase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of oxidoreductase complex NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative menaquinol dehydrogenase
    NP_416107.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1663609..1664463
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416107.1 putative menaquinol dehydrogenase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416107.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6N8QRZ5, A0A8T6PJN6
      Conserved Domains (1) summary
      pfam04976
      Location:1 → 274
      DmsC; DMSO reductase anchor subunit (DmsC)
    Nucleotide Protein
    Heading Accession and Version

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