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    yfdY DUF2545 domain-containing protein YfdY [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948842, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yfdY
    Official Full Name
    DUF2545 domain-containing protein YfdY
    Primary source
    ECOCYC:G7240
    Locus tag
    b2377
    See related
    ASAP:ABE-0007841
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2373
    Summary
    Induced during biofilm formation. [More information is available at EcoGene: EG14147]. Regulation has been described . [More information is available at EcoCyc: G7240].
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    Genomic context

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    Sequence:
    NC_000913.3 (2495050..2495292, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YfdX Neighboring gene colanic acid synthesis putative lipoprotein YpdI Neighboring gene palmitoleoyl acyltransferase Neighboring gene putative membrane protein YpdK

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The ypdI gene codes for a putative lipoprotein involved in the synthesis of colanic acid in Escherichia coli. Potrykus J, et al. FEMS Microbiol Lett, 2004 Jun 15. PMID 15183873
    2. Gene expression in Escherichia coli biofilms. Ren D, et al. Appl Microbiol Biotechnol, 2004 May. PMID 14727089
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DUF2545 domain-containing protein YfdY

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2495050..2495292 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416878.1 DUF2545 domain-containing protein YfdY [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416878.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A3K0ZRP9
      Conserved Domains (1) summary
      pfam10810
      Location:1 → 80
      DUF2545; Protein of unknown function (DUF2545)
    Nucleotide Protein
    Heading Accession and Version

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