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    rimM ribosome maturation factor RimM [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947101, updated on 17-Dec-2024

    Summary

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    Official Symbol
    rimM
    Official Full Name
    ribosome maturation factor RimM
    Primary source
    ECOCYC:EG11153
    Locus tag
    b2608
    See related
    ASAP:ABE-0008579
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2605; yfjA
    Summary
    other PDB (T. thermophilus): [More information is available at EcoGene: EG11153]. RimM may play a role in the maturation of the 30S ribosomal subunit, or possibly in initiation of translation . [More information is available at EcoCyc: EG11153].
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    Genomic context

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    Sequence:
    NC_000913.3 (2745370..2745918, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene 50S ribosomal subunit protein L19 Neighboring gene tRNA m(1)G37 methyltransferase Neighboring gene 30S ribosomal subunit protein S16 Neighboring gene signal recognition particle protein component

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A regulatory element within a gene of a ribosomal protein operon of Escherichia coli negatively controls expression by decreasing the translational efficiency. Wikström PM, et al. Mol Gen Genet, 1989 Nov. PMID 2516239
    2. Hybrid protein between ribosomal protein S16 and RimM of Escherichia coli retains the ribosome maturation function of both proteins. Lövgren JM, et al. J Bacteriol, 2001 Sep. PMID 11514519, Free PMC Article
    3. Importance of mRNA folding and start codon accessibility in the expression of genes in a ribosomal protein operon of Escherichia coli. Wikström PM, et al. J Mol Biol, 1992 Apr 20. PMID 1569581
    4. Noncoordinate translation-level regulation of ribosomal and nonribosomal protein genes in the Escherichia coli trmD operon. Wikström PM, et al. J Bacteriol, 1988 Jul. PMID 3290194, Free PMC Article
    5. A novel ribosome-associated protein is important for efficient translation in Escherichia coli. Bylund GO, et al. J Bacteriol, 1997 Jul. PMID 9226267, Free PMC Article

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within maturation of SSU-rRNA IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within ribosomal small subunit assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in ribosomal small subunit biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ribosome maturation factor RimM

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2745370..2745918 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417099.4 ribosome maturation factor RimM [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417099.4

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      B1LPB5, B5Z227
      UniProtKB/TrEMBL
      A0A066ST15, A0A0H3PS84, A0A829KZG1, A0A8E0KW66, A0AAN3V5C2, W1F909
      Conserved Domains (1) summary
      PRK00122
      Location:10 → 182
      rimM; 16S rRNA-processing protein RimM; Provisional
    Nucleotide Protein
    Heading Accession and Version

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